Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TBCD-214ENST00000574801 586 ntTSL 417.05■□□□□ 0.322e-6■□□□□ 8.5
YBX3P16989 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.35e-8■□□□□ 8.5
YBX3P16989 TBCD-224ENST00000576760 1059 ntTSL 516.83■□□□□ 0.282e-6■□□□□ 8.5
YBX3P16989 THOC5-207ENST00000428374 729 ntTSL 216.7■□□□□ 0.263e-8■□□□□ 8.5
YBX3P16989 SELENOP-211ENST00000513303 714 ntTSL 216.67■□□□□ 0.262e-6■□□□□ 8.5
YBX3P16989 PLD3-213ENST00000488311 750 ntTSL 216.57■□□□□ 0.243e-8■□□□□ 8.5
YBX3P16989 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.1■□□□□ 0.175e-8■□□□□ 8.5
YBX3P16989 HNRNPM-215ENST00000601645 832 ntTSL 316.06■□□□□ 0.165e-8■□□□□ 8.5
YBX3P16989 GOLPH3L-202ENST00000427665 973 ntTSL 316.05■□□□□ 0.162e-6■□□□□ 8.5
YBX3P16989 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.112e-6■□□□□ 8.5
YBX3P16989 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.082e-6■□□□□ 8.5
YBX3P16989 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.43■□□□□ 0.065e-8■□□□□ 8.5
YBX3P16989 SCAP-207ENST00000441517 3748 ntTSL 215.43■□□□□ 0.065e-8■□□□□ 8.5
YBX3P16989 LSM8-201ENST00000249299 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.065e-8■□□□□ 8.5
YBX3P16989 HNRNPM-210ENST00000598367 298 ntTSL 515.24■□□□□ 0.035e-8■□□□□ 8.5
YBX3P16989 SCAP-202ENST00000320017 3430 ntTSL 215.11■□□□□ 0.015e-8■□□□□ 8.5
YBX3P16989 TBCD-210ENST00000572953 702 ntTSL 514.89□□□□□ -0.032e-6■□□□□ 8.5
YBX3P16989 TBCD-206ENST00000571712 850 ntTSL 514.88□□□□□ -0.032e-6■□□□□ 8.5
YBX3P16989 THOC5-213ENST00000475187 1935 ntTSL 1 (best)14.8□□□□□ -0.043e-8■□□□□ 8.5
YBX3P16989 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.042e-6■□□□□ 8.5
YBX3P16989 SELENOP-208ENST00000510965 787 ntTSL 514.39□□□□□ -0.112e-6■□□□□ 8.5
YBX3P16989 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.112e-6■□□□□ 8.5
YBX3P16989 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.122e-6■□□□□ 8.5
YBX3P16989 TBCD-213ENST00000574422 879 ntTSL 214.25□□□□□ -0.132e-6■□□□□ 8.5
YBX3P16989 SUGP2-211ENST00000598240 3235 ntTSL 214.14□□□□□ -0.152e-6■□□□□ 8.5
YBX3P16989 TBCD-211ENST00000572984 682 ntTSL 514.02□□□□□ -0.172e-6■□□□□ 8.5
YBX3P16989 SUGP2-213ENST00000600239 5565 ntTSL 213.93□□□□□ -0.182e-6■□□□□ 8.5
YBX3P16989 TBCD-217ENST00000574975 867 ntTSL 513.7□□□□□ -0.222e-6■□□□□ 8.5
YBX3P16989 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.222e-6■□□□□ 8.5
YBX3P16989 TBCD-219ENST00000576160 942 ntTSL 513.31□□□□□ -0.282e-6■□□□□ 8.5
YBX3P16989 GOLPH3L-203ENST00000479757 456 ntTSL 213.2□□□□□ -0.32e-6■□□□□ 8.5
YBX3P16989 SELENOP-206ENST00000509276 738 ntTSL 513.1□□□□□ -0.312e-6■□□□□ 8.5
YBX3P16989 THOC5-211ENST00000455450 579 ntTSL 312.74□□□□□ -0.373e-8■□□□□ 8.5
YBX3P16989 THOC5-204ENST00000397873 2374 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.383e-8■□□□□ 8.5
YBX3P16989 ARFGAP3-203ENST00000437119 1650 ntTSL 1 (best) BASIC12.03□□□□□ -0.483e-8■□□□□ 8.5
YBX3P16989 RNPEP-208ENST00000479531 667 ntTSL 212.03□□□□□ -0.482e-6■□□□□ 8.5
YBX3P16989 RNF213-207ENST00000559070 4644 ntTSL 1 (best)11.74□□□□□ -0.532e-6■□□□□ 8.5
YBX3P16989 ABRAXAS1-209ENST00000611288 655 ntTSL 511.65□□□□□ -0.543e-8■□□□□ 8.5
YBX3P16989 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC11.63□□□□□ -0.552e-6■□□□□ 8.5
YBX3P16989 SNF8-211ENST00000512243 863 ntTSL 211.61□□□□□ -0.552e-6■□□□□ 8.5
YBX3P16989 SUGP2-201ENST00000330854 3629 ntTSL 1 (best)11.58□□□□□ -0.562e-6■□□□□ 8.5
YBX3P16989 SELENOP-214ENST00000514985 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.562e-6■□□□□ 8.5
YBX3P16989 SNF8-204ENST00000506104 455 ntTSL 311.5□□□□□ -0.572e-6■□□□□ 8.5
YBX3P16989 THOC5-201ENST00000358079 2427 ntTSL 511.5□□□□□ -0.573e-8■□□□□ 8.5
YBX3P16989 CDCA7-207ENST00000468359 906 ntTSL 311.09□□□□□ -0.632e-6■□□□□ 8.5
YBX3P16989 ARFGAP3-202ENST00000435208 501 ntTSL 311□□□□□ -0.653e-8■□□□□ 8.5
YBX3P16989 SELENOP-212ENST00000514218 1047 ntTSL 510.67□□□□□ -0.72e-6■□□□□ 8.5
YBX3P16989 ABRAXAS1-206ENST00000506553 1869 ntTSL 5 BASIC10.33□□□□□ -0.763e-8■□□□□ 8.5
YBX3P16989 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.772e-6■□□□□ 8.5
YBX3P16989 LSM8-202ENST00000411938 290 ntTSL 310.19□□□□□ -0.785e-8■□□□□ 8.5
YBX3P16989 THOC5-209ENST00000442555 3012 ntTSL 29.8□□□□□ -0.843e-8■□□□□ 8.5
YBX3P16989 THOC5-208ENST00000440771 1006 ntTSL 39.74□□□□□ -0.853e-8■□□□□ 8.5
YBX3P16989 SUGP2-206ENST00000594773 4169 ntTSL 29.71□□□□□ -0.862e-6■□□□□ 8.5
YBX3P16989 SELENOP-213ENST00000514403 653 ntTSL 29.5□□□□□ -0.892e-6■□□□□ 8.5
YBX3P16989 SNF8-210ENST00000511214 429 ntTSL 29.28□□□□□ -0.922e-6■□□□□ 8.5
YBX3P16989 PACSIN2-211ENST00000507586 362 ntTSL 38.97□□□□□ -0.973e-8■□□□□ 8.5
YBX3P16989 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.992e-6■□□□□ 8.5
YBX3P16989 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC8.77□□□□□ -1.012e-6■□□□□ 8.5
YBX3P16989 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.073e-8■□□□□ 8.5
YBX3P16989 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC8.36□□□□□ -1.075e-8■□□□□ 8.5
YBX3P16989 STAU2-224ENST00000523533 805 ntTSL 37.17□□□□□ -1.263e-8■□□□□ 8.5
YBX3P16989 GTF3C3-207ENST00000451088 488 ntTSL 37.14□□□□□ -1.275e-8■□□□□ 8.5
YBX3P16989 SELENOP-210ENST00000512980 4175 ntTSL 26.97□□□□□ -1.292e-6■□□□□ 8.5
YBX3P16989 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.9□□□□□ -1.35e-8■□□□□ 8.5
YBX3P16989 ABRAXAS1-205ENST00000505489 847 ntTSL 56.84□□□□□ -1.313e-8■□□□□ 8.5
YBX3P16989 GTF3C3-208ENST00000455546 547 ntTSL 46.43□□□□□ -1.385e-8■□□□□ 8.5
YBX3P16989 HNRNPM-203ENST00000593293 764 ntTSL 35.65□□□□□ -1.55e-8■□□□□ 8.5
YBX3P16989 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC14.85□□□□□ -0.034e-8■□□□□ 8.5
YBX3P16989 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC14.67□□□□□ -0.064e-8■□□□□ 8.5
YBX3P16989 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.094e-8■□□□□ 8.5
YBX3P16989 PPP1R8-205ENST00000486634 459 ntTSL 38.8□□□□□ -14e-8■□□□□ 8.5
YBX3P16989 MAN2A2-230ENST00000561448 1443 ntTSL 215.6■□□□□ 0.096e-12■□□□□ 8.5
YBX3P16989 JADE1-204ENST00000503785 584 ntTSL 431.14■■■□□ 2.582e-6■□□□□ 8.5
YBX3P16989 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.71■■■□□ 2.513e-8■□□□□ 8.5
YBX3P16989 PITX1-202ENST00000502676 666 ntTSL 330.24■■■□□ 2.432e-6■□□□□ 8.5
YBX3P16989 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.03■■■□□ 2.243e-8■□□□□ 8.5
YBX3P16989 ACSS2-213ENST00000480978 844 ntTSL 228.77■■■□□ 2.22e-6■□□□□ 8.5
YBX3P16989 JADE1-208ENST00000510308 564 ntTSL 227.66■■■□□ 2.022e-6■□□□□ 8.5
YBX3P16989 MBOAT7-204ENST00000414665 876 ntTSL 227.55■■■□□ 23e-8■□□□□ 8.5
YBX3P16989 MBOAT7-207ENST00000449249 707 ntTSL 527.3■■□□□ 1.963e-8■□□□□ 8.5
YBX3P16989 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC26.09■■□□□ 1.772e-6■□□□□ 8.5
YBX3P16989 MBOAT7-210ENST00000474910 629 ntTSL 225.93■■□□□ 1.743e-8■□□□□ 8.5
YBX3P16989 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.683e-8■□□□□ 8.5
YBX3P16989 CALM1-205ENST00000553542 877 ntTSL 5 BASIC24.68■■□□□ 1.542e-6■□□□□ 8.5
YBX3P16989 CALM1-208ENST00000553995 583 ntTSL 224.68■■□□□ 1.542e-6■□□□□ 8.5
YBX3P16989 CALM1-210ENST00000555132 554 ntTSL 424.68■■□□□ 1.542e-6■□□□□ 8.5
YBX3P16989 CALM1-213ENST00000556757 588 ntTSL 224.68■■□□□ 1.542e-6■□□□□ 8.5
YBX3P16989 CALM1-215ENST00000557123 569 ntTSL 324.68■■□□□ 1.542e-6■□□□□ 8.5
YBX3P16989 RHNO1-205ENST00000535978 543 ntTSL 424.33■■□□□ 1.492e-6■□□□□ 8.5
YBX3P16989 EBNA1BP2-208ENST00000483082 759 ntTSL 224.23■■□□□ 1.473e-8■□□□□ 8.5
YBX3P16989 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.64■■□□□ 1.373e-8■□□□□ 8.5
YBX3P16989 MBOAT7-211ENST00000491216 564 ntTSL 222.99■■□□□ 1.273e-8■□□□□ 8.5
YBX3P16989 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.38■■□□□ 1.172e-6■□□□□ 8.5
YBX3P16989 MBOAT7-206ENST00000437868 2033 ntTSL 1 (best)21.62■■□□□ 1.053e-8■□□□□ 8.5
YBX3P16989 JADE1-206ENST00000507833 552 ntTSL 421.61■■□□□ 1.052e-6■□□□□ 8.5
YBX3P16989 EBNA1BP2-206ENST00000472982 1008 ntTSL 220.85■□□□□ 0.933e-8■□□□□ 8.5
YBX3P16989 YIF1A-209ENST00000494836 540 ntTSL 220.79■□□□□ 0.923e-12■□□□□ 8.5
YBX3P16989 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.72■□□□□ 0.912e-6■□□□□ 8.5
YBX3P16989 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC20.47■□□□□ 0.873e-12■□□□□ 8.5
YBX3P16989 SLC7A5-202ENST00000563489 780 ntTSL 220.33■□□□□ 0.853e-12■□□□□ 8.5
Retrieved 100 of 29,075 protein–RNA pairs in 525.8 ms