Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 CICP24-201ENST00000605464 2705 ntBASIC16.86■□□□□ 0.29
HLA-DOAP06340 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.86■□□□□ 0.29
HLA-DOAP06340 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DOAP06340 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 AC232323.1-201ENST00000540724 2099 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 PYY2-201ENST00000315776 282 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 AC092638.2-201ENST00000441105 947 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 CHCHD2P2-201ENST00000503744 321 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 AC005740.1-201ENST00000515639 522 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 TMCO5B-205ENST00000530020 894 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 AP000911.2-201ENST00000534330 502 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 MIR6858-201ENST00000620733 67 ntBASIC16.85■□□□□ 0.29
HLA-DOAP06340 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DOAP06340 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DOAP06340 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 RN7SKP109-201ENST00000410592 316 ntBASIC16.84■□□□□ 0.29
HLA-DOAP06340 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 RNA5SP417-201ENST00000516459 108 ntBASIC16.84■□□□□ 0.29
HLA-DOAP06340 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC16.84■□□□□ 0.29
HLA-DOAP06340 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DOAP06340 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms