Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RPL7P35-201ENST00000446943 740 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 LDHBP1-201ENST00000455730 1119 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RN7SL8P-201ENST00000461771 266 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 KRT8P1-201ENST00000557533 1207 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 SORD2P-201ENST00000558556 1069 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 AC092171.5-201ENST00000608012 942 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 LAP3P2-201ENST00000454686 1454 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 FP325330.2-201ENST00000624219 5630 ntBASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CTDP1Q9Y5B0 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CTDP1Q9Y5B0 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CTDP1Q9Y5B0 MYADML-201ENST00000474610 2147 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 KRT8P31-201ENST00000504812 1408 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 Z69890.1-201ENST00000382990 339 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 MIR557-201ENST00000385239 98 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AL627422.1-201ENST00000434104 580 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AC090386.2-201ENST00000623010 1039 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AC011491.1-203ENST00000637688 543 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 AL354702.1-201ENST00000442006 1960 ntBASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 EML1-203ENST00000334192 4064 ntTSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CTDP1Q9Y5B0 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms