Protein–RNA interactions for Protein: Q9UPX8

SHANK2, SH3 and multiple ankyrin repeat domains protein 2, humanhuman

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2Q9UPX8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 CICP16-201ENST00000502609 2813 ntBASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK2Q9UPX8 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 SIRPB3P-201ENST00000340424 1216 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 AF274858.1-201ENST00000406288 372 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 VDAC1P11-201ENST00000458323 852 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 NAV1-210ENST00000593583 726 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TPO-203ENST00000346956 2923 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 AC092810.2-201ENST00000431570 362 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 NRADDP-201ENST00000437305 691 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 RPL3P5-201ENST00000441645 1232 ntBASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK2Q9UPX8 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 OR6D1P-202ENST00000641007 5290 ntBASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 AC092896.1-201ENST00000465850 380 ntBASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 AC113385.2-201ENST00000614465 762 ntBASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK2Q9UPX8 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 AC061965.1-201ENST00000560524 1465 ntBASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 LINC00552-201ENST00000625151 2579 ntBASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SHANK2Q9UPX8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms