Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 TPT1P9-201ENST00000413759 514 ntBASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 FAM21EP-201ENST00000417804 985 ntBASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 RN7SL480P-201ENST00000581481 294 ntBASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CSMD1Q96PZ7 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 ASS1P1-201ENST00000402854 1237 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AL359092.2-201ENST00000423330 585 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 CA5BP1-205ENST00000435806 1064 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 GRAMD4P6-201ENST00000556999 244 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AL359091.4-201ENST00000610052 409 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AC134878.2-201ENST00000620700 1265 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 MROH4P-201ENST00000431302 1578 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AC005722.1-201ENST00000431878 964 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 OR4C14P-201ENST00000440929 923 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AL450346.2-201ENST00000495602 1024 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 PRR20FP-201ENST00000603320 180 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 RPL18AP15-201ENST00000430258 517 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AC007679.1-201ENST00000458609 502 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 RNU1-80P-201ENST00000459500 161 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 RPL10P8-201ENST00000522888 313 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 RN7SL605P-201ENST00000577229 281 ntBASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC11.92□□□□□ -0.5
CSMD1Q96PZ7 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms