Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 NFIC-211ENST00000641145 8399 ntBASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC022447.6-201ENST00000515522 438 ntBASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 MIR3147-201ENST00000577811 66 ntBASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC009884.2-201ENST00000603110 324 ntBASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 MIR6720-201ENST00000611664 98 ntBASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC144BQ3MJ40 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 AC008267.1-201ENST00000474858 1069 ntBASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 MIR4754-201ENST00000582477 89 ntBASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC144BQ3MJ40 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 MYO15B-237ENST00000642007 4893 ntBASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 TLE1P1-201ENST00000422965 589 ntBASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC144BQ3MJ40 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms