Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 MIR658-201ENST00000385210 100 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC11.7□□□□□ -0.54
CX3CL1P78423 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC11.7□□□□□ -0.54
CX3CL1P78423 YBX1P6-201ENST00000442962 1002 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 CHMP1AP1-201ENST00000445563 662 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 CSF2RBP1-201ENST00000447905 391 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 AP006547.1-201ENST00000563435 692 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC11.7□□□□□ -0.54
CX3CL1P78423 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 MIR6805-201ENST00000615055 62 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 AL136301.1-201ENST00000615830 422 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC11.7□□□□□ -0.54
CX3CL1P78423 COX11-210ENST00000639671 696 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.7□□□□□ -0.54
CX3CL1P78423 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.7□□□□□ -0.54
CX3CL1P78423 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC11.7□□□□□ -0.54
CX3CL1P78423 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC11.7□□□□□ -0.54
CX3CL1P78423 AL591122.2-201ENST00000624125 1853 ntBASIC11.7□□□□□ -0.54
CX3CL1P78423 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CX3CL1P78423 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC11.69□□□□□ -0.54
CX3CL1P78423 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
CX3CL1P78423 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 OR8S1-201ENST00000310194 1080 ntBASIC11.69□□□□□ -0.54
CX3CL1P78423 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 TPO-206ENST00000382269 1155 ntTSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 AC099336.1-201ENST00000417053 1171 ntBASIC11.69□□□□□ -0.54
CX3CL1P78423 KRT223P-202ENST00000449164 1292 ntBASIC11.69□□□□□ -0.54
CX3CL1P78423 AL035414.1-201ENST00000451327 857 ntBASIC11.69□□□□□ -0.54
CX3CL1P78423 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC11.69□□□□□ -0.54
CX3CL1P78423 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.69□□□□□ -0.54
CX3CL1P78423 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC11.69□□□□□ -0.54
CX3CL1P78423 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC11.69□□□□□ -0.54
CX3CL1P78423 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 KHSRPP1-201ENST00000427983 1768 ntBASIC11.69□□□□□ -0.54
CX3CL1P78423 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC11.69□□□□□ -0.54
CX3CL1P78423 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
CX3CL1P78423 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms