Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 COX11-210ENST00000639671 696 ntBASIC11.91□□□□□ -0.5
CDX1P47902 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 PRSS30P-206ENST00000641773 873 ntBASIC11.91□□□□□ -0.5
CDX1P47902 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
CDX1P47902 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC11.91□□□□□ -0.5
CDX1P47902 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC11.91□□□□□ -0.5
CDX1P47902 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
CDX1P47902 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 PDIA3P1-201ENST00000471856 1510 ntBASIC11.91□□□□□ -0.5
CDX1P47902 MIR193BHG-211ENST00000641433 5365 ntBASIC11.91□□□□□ -0.5
CDX1P47902 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
CDX1P47902 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC11.91□□□□□ -0.5
CDX1P47902 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.91□□□□□ -0.5
CDX1P47902 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
CDX1P47902 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
CDX1P47902 B9D1-203ENST00000395615 805 ntTSL 3 BASIC11.9□□□□□ -0.5
CDX1P47902 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.9□□□□□ -0.5
CDX1P47902 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 KRT223P-202ENST00000449164 1292 ntBASIC11.9□□□□□ -0.5
CDX1P47902 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 AC079316.1-201ENST00000548397 411 ntBASIC11.9□□□□□ -0.5
CDX1P47902 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 SAMD11P1-201ENST00000571429 661 ntBASIC11.9□□□□□ -0.5
CDX1P47902 AC007787.1-201ENST00000588095 1583 ntBASIC11.9□□□□□ -0.5
CDX1P47902 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC11.9□□□□□ -0.5
CDX1P47902 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 AC132938.4-201ENST00000623835 848 ntBASIC11.9□□□□□ -0.5
CDX1P47902 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
CDX1P47902 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.9□□□□□ -0.5
CDX1P47902 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.9□□□□□ -0.5
CDX1P47902 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CDX1P47902 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CDX1P47902 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.51
CDX1P47902 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
CDX1P47902 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.51
CDX1P47902 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms