Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 HSPA8P5-201ENST00000456928 2069 ntBASIC15.17■□□□□ 0.02
BDNFP23560 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.17■□□□□ 0.02
BDNFP23560 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.17■□□□□ 0.02
BDNFP23560 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 KRT17P5-201ENST00000332088 839 ntBASIC15.17■□□□□ 0.02
BDNFP23560 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.17■□□□□ 0.02
BDNFP23560 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.17■□□□□ 0.02
BDNFP23560 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.17■□□□□ 0.02
BDNFP23560 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 RPSAP15-201ENST00000448168 861 ntBASIC15.17■□□□□ 0.02
BDNFP23560 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.17■□□□□ 0.02
BDNFP23560 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.17■□□□□ 0.02
BDNFP23560 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.17■□□□□ 0.02
BDNFP23560 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
BDNFP23560 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 BX640514.1-201ENST00000583223 1918 ntBASIC15.17■□□□□ 0.02
BDNFP23560 BRD7P5-201ENST00000299197 1822 ntBASIC15.17■□□□□ 0.02
BDNFP23560 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.17■□□□□ 0.02
BDNFP23560 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.17■□□□□ 0.02
BDNFP23560 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 KRT18P9-201ENST00000604826 1300 ntBASIC15.17■□□□□ 0.02
BDNFP23560 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
BDNFP23560 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.16■□□□□ 0.02
BDNFP23560 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.16■□□□□ 0.02
BDNFP23560 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.16■□□□□ 0.02
BDNFP23560 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 MIR3677-201ENST00000578964 60 ntBASIC15.16■□□□□ 0.02
BDNFP23560 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.16■□□□□ 0.02
BDNFP23560 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.16■□□□□ 0.02
BDNFP23560 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.16■□□□□ 0.02
BDNFP23560 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
BDNFP23560 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
BDNFP23560 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.16■□□□□ 0.02
BDNFP23560 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
BDNFP23560 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
BDNFP23560 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms