Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC18.18■□□□□ 0.5
NPHP1O15259 LINC00431-202ENST00000636375 159 ntBASIC18.18■□□□□ 0.5
NPHP1O15259 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
NPHP1O15259 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
NPHP1O15259 AC013268.4-201ENST00000637413 2228 ntBASIC18.18■□□□□ 0.5
NPHP1O15259 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.17■□□□□ 0.5
NPHP1O15259 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.17■□□□□ 0.5
NPHP1O15259 AC006504.5-208ENST00000588784 2401 ntBASIC18.17■□□□□ 0.5
NPHP1O15259 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.17■□□□□ 0.5
NPHP1O15259 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
NPHP1O15259 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NPHP1O15259 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NPHP1O15259 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.17■□□□□ 0.5
NPHP1O15259 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.17■□□□□ 0.5
NPHP1O15259 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.17■□□□□ 0.5
NPHP1O15259 AC084752.1-201ENST00000509766 622 ntBASIC18.17■□□□□ 0.5
NPHP1O15259 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC18.17■□□□□ 0.5
NPHP1O15259 AC005357.2-202ENST00000590507 1060 ntBASIC18.17■□□□□ 0.5
NPHP1O15259 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.17■□□□□ 0.5
NPHP1O15259 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
NPHP1O15259 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
NPHP1O15259 AC139712.1-201ENST00000378256 1875 ntBASIC18.17■□□□□ 0.5
NPHP1O15259 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 DKFZP434A062-201ENST00000573103 5021 ntBASIC18.17■□□□□ 0.5
NPHP1O15259 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NPHP1O15259 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 AL590440.2-201ENST00000641973 1595 ntBASIC18.17■□□□□ 0.5
NPHP1O15259 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPHP1O15259 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NPHP1O15259 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.16■□□□□ 0.5
NPHP1O15259 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC18.16■□□□□ 0.5
NPHP1O15259 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NPHP1O15259 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NPHP1O15259 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC18.16■□□□□ 0.5
NPHP1O15259 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.16■□□□□ 0.5
NPHP1O15259 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NPHP1O15259 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NPHP1O15259 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 ERP29P1-201ENST00000442902 706 ntBASIC18.16■□□□□ 0.5
NPHP1O15259 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NPHP1O15259 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.16■□□□□ 0.5
NPHP1O15259 RNA5SP417-201ENST00000516459 108 ntBASIC18.16■□□□□ 0.5
NPHP1O15259 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC18.16■□□□□ 0.5
NPHP1O15259 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.16■□□□□ 0.5
NPHP1O15259 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.16■□□□□ 0.5
NPHP1O15259 MIR5196-201ENST00000578146 115 ntBASIC18.16■□□□□ 0.5
NPHP1O15259 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC18.16■□□□□ 0.5
NPHP1O15259 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.16■□□□□ 0.5
NPHP1O15259 AL591471.1-201ENST00000621855 229 ntBASIC18.16■□□□□ 0.5
NPHP1O15259 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
NPHP1O15259 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.16■□□□□ 0.5
NPHP1O15259 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.16■□□□□ 0.5
NPHP1O15259 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
NPHP1O15259 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NPHP1O15259 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC18.16■□□□□ 0.5
NPHP1O15259 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC18.16■□□□□ 0.5
NPHP1O15259 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPHP1O15259 C1R-202ENST00000536053 2347 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms