Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
SDCBPO00560 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 DGCR5-201ENST00000399539 862 ntBASIC12.35□□□□□ -0.43
SDCBPO00560 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
SDCBPO00560 AP006294.1-201ENST00000415407 339 ntBASIC12.35□□□□□ -0.43
SDCBPO00560 TLE1P1-201ENST00000422965 589 ntBASIC12.35□□□□□ -0.43
SDCBPO00560 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.35□□□□□ -0.43
SDCBPO00560 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC12.35□□□□□ -0.43
SDCBPO00560 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.35□□□□□ -0.43
SDCBPO00560 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
SDCBPO00560 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.35□□□□□ -0.43
SDCBPO00560 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
SDCBPO00560 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.35□□□□□ -0.43
SDCBPO00560 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SDCBPO00560 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 AC114271.1-201ENST00000612689 2813 ntBASIC12.34□□□□□ -0.43
SDCBPO00560 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.34□□□□□ -0.43
SDCBPO00560 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SDCBPO00560 CRB3P1-201ENST00000449338 276 ntBASIC12.34□□□□□ -0.43
SDCBPO00560 FO681548.1-201ENST00000455617 1132 ntBASIC12.34□□□□□ -0.43
SDCBPO00560 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.34□□□□□ -0.43
SDCBPO00560 TDH-203ENST00000531764 1110 ntBASIC12.34□□□□□ -0.43
SDCBPO00560 PTP4A1P2-201ENST00000546033 454 ntBASIC12.34□□□□□ -0.43
SDCBPO00560 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.34□□□□□ -0.43
SDCBPO00560 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
SDCBPO00560 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
SDCBPO00560 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms