Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.68□□□□□ -0.22
UPK1AO00322 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.68□□□□□ -0.22
UPK1AO00322 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.68□□□□□ -0.22
UPK1AO00322 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 AC027237.1-201ENST00000560942 655 ntBASIC13.68□□□□□ -0.22
UPK1AO00322 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 AGAP12P-201ENST00000585227 2359 ntBASIC13.68□□□□□ -0.22
UPK1AO00322 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
UPK1AO00322 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
UPK1AO00322 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.68□□□□□ -0.22
UPK1AO00322 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
UPK1AO00322 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
UPK1AO00322 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
UPK1AO00322 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.67□□□□□ -0.22
UPK1AO00322 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.67□□□□□ -0.22
UPK1AO00322 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.67□□□□□ -0.22
UPK1AO00322 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.67□□□□□ -0.22
UPK1AO00322 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.67□□□□□ -0.22
UPK1AO00322 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.67□□□□□ -0.22
UPK1AO00322 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 HILS1-202ENST00000545329 423 ntBASIC13.67□□□□□ -0.22
UPK1AO00322 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.67□□□□□ -0.22
UPK1AO00322 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.67□□□□□ -0.22
UPK1AO00322 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.67□□□□□ -0.22
UPK1AO00322 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 AL023775.1-201ENST00000454907 1746 ntBASIC13.67□□□□□ -0.22
UPK1AO00322 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
UPK1AO00322 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.67□□□□□ -0.22
UPK1AO00322 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
UPK1AO00322 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
UPK1AO00322 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.66□□□□□ -0.22
UPK1AO00322 E2F3P2-201ENST00000447755 1422 ntBASIC13.66□□□□□ -0.22
UPK1AO00322 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
UPK1AO00322 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.66□□□□□ -0.22
UPK1AO00322 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
UPK1AO00322 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
UPK1AO00322 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms