Protein–RNA interactions for Protein: Q9Y3E1

HDGFL3, Hepatoma-derived growth factor-related protein 3, humanhuman

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3Q9Y3E1 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CSH2-202ENST00000345366 598 ntTSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 NPPA-201ENST00000376476 728 ntTSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 HNRNPA1P32-201ENST00000396326 963 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 OR2R1P-201ENST00000441404 914 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 AC092658.1-201ENST00000505836 891 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 MARK2P5-201ENST00000507649 634 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 AC009779.1-201ENST00000551138 283 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CSH2-206ENST00000560142 749 ntTSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 AL022313.4-201ENST00000562756 2046 ntBASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC12.98□□□□□ -0.33
HDGFL3Q9Y3E1 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 CICP20-201ENST00000443330 2801 ntBASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 FAM86MP-201ENST00000340703 885 ntBASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.97□□□□□ -0.33
HDGFL3Q9Y3E1 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms