Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HIST1H2APS2-201ENST00000454426 370 ntBASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 HNRNPA1P42-201ENST00000458678 957 ntBASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 TREHP1-201ENST00000531328 465 ntBASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 AC012617.1-204ENST00000586340 2305 ntBASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 AC007686.3-201ENST00000619017 3487 ntBASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 NAA40-205ENST00000539656 577 ntTSL 4 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 AC090510.3-201ENST00000615831 821 ntBASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC26.98■■□□□ 1.91
SHROOM4Q9ULL8 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 RPS18P9-201ENST00000482817 460 ntBASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 RNA5SP406-201ENST00000516106 112 ntBASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 CTBP2P6-201ENST00000526402 1229 ntBASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SHROOM4Q9ULL8 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 MPI-203ENST00000535694 1523 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 CCT8L1P-201ENST00000465400 1674 ntBASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC26.96■■□□□ 1.91
SHROOM4Q9ULL8 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 ALG1L7P-201ENST00000502317 768 ntBASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 DUT-207ENST00000559416 635 ntTSL 2 BASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC26.95■■□□□ 1.91
SHROOM4Q9ULL8 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms