Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 BASP1P1-201ENST00000430708 665 ntBASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AL662799.1-202ENST00000614205 422 ntBASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ARL13B-210ENST00000535334 3906 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC083964.2-201ENST00000623988 2396 ntBASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AC020658.7-201ENST00000624274 2442 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC090505.1-201ENST00000430515 1834 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 SOCS2P1-201ENST00000417727 557 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC114812.1-204ENST00000449669 728 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC004890.2-204ENST00000481968 304 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC093214.1-201ENST00000511688 1107 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 RRP7BP-205ENST00000566851 833 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AC093512.1-201ENST00000617969 520 ntBASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms