Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL596257.1-201ENST00000641463 2694 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 CICP16-201ENST00000502609 2813 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 SAT1-201ENST00000379251 801 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 SAT1-202ENST00000379253 909 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 SAT1-203ENST00000379254 868 ntTSL 3 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AC006987.1-201ENST00000413610 527 ntBASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AC012362.1-201ENST00000434906 739 ntBASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 IGHV3-37-201ENST00000518544 340 ntBASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PAAF1Q9BRP4 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 AC018638.5-201ENST00000450885 754 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 SCARNA12-201ENST00000459155 270 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 CTBP2P4-201ENST00000513884 920 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 NUDT4P2-201ENST00000578341 546 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 RN7SL455P-201ENST00000580629 282 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 RN7SL470P-201ENST00000583069 259 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 USP39-220ENST00000613444 2161 ntTSL 2 BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 AC090502.4-201ENST00000551714 1386 ntBASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PAAF1Q9BRP4 LINC02486-201ENST00000604157 3000 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms