Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL109954.3-201ENST00000615088 558 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC9.92□□□□□ -0.82
PRKDCP78527 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
PRKDCP78527 AC004112.1-201ENST00000431064 561 ntTSL 3 BASIC9.92□□□□□ -0.82
PRKDCP78527 AL033381.2-201ENST00000603854 732 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 MIR8071-1-201ENST00000616769 65 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 MIR8071-2-201ENST00000616772 65 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 AC080038.2-201ENST00000617734 423 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 PUDPP2-202ENST00000628080 737 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 KRT8P25-201ENST00000473150 1456 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC9.92□□□□□ -0.82
PRKDCP78527 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 NME1-209ENST00000511355 1645 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC9.92□□□□□ -0.82
PRKDCP78527 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC9.92□□□□□ -0.82
PRKDCP78527 AL031773.1-201ENST00000453579 554 ntTSL 3 BASIC9.92□□□□□ -0.82
PRKDCP78527 NDFIP2-AS1-201ENST00000457171 431 ntTSL 3 BASIC9.92□□□□□ -0.82
PRKDCP78527 AC138781.1-201ENST00000501322 505 ntTSL 3 BASIC9.92□□□□□ -0.82
PRKDCP78527 AC005336.1-201ENST00000585431 1243 ntBASIC9.92□□□□□ -0.82
PRKDCP78527 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
PRKDCP78527 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 AL008719.1-201ENST00000430449 473 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 DIS3L2P1-201ENST00000509197 559 ntBASIC9.91□□□□□ -0.82
PRKDCP78527 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC9.91□□□□□ -0.82
PRKDCP78527 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC9.91□□□□□ -0.82
PRKDCP78527 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC9.91□□□□□ -0.82
PRKDCP78527 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 CD37-203ENST00000426897 1204 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 PLA2G6-213ENST00000447598 567 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC9.91□□□□□ -0.82
PRKDCP78527 RN7SL624P-201ENST00000580297 278 ntBASIC9.91□□□□□ -0.82
PRKDCP78527 AC025682.1-203ENST00000584391 442 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC9.91□□□□□ -0.82
PRKDCP78527 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 PGAP2-219ENST00000479072 894 ntTSL 3 BASIC9.91□□□□□ -0.82
PRKDCP78527 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 AC011389.2-201ENST00000514811 365 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC9.91□□□□□ -0.82
PRKDCP78527 FP325317.1-201ENST00000539936 1042 ntBASIC9.91□□□□□ -0.82
PRKDCP78527 AL512310.5-201ENST00000551999 515 ntBASIC9.91□□□□□ -0.82
PRKDCP78527 AC008915.2-201ENST00000570080 730 ntTSL 5 BASIC9.91□□□□□ -0.82
PRKDCP78527 KRT18P8-201ENST00000581937 1246 ntBASIC9.91□□□□□ -0.82
PRKDCP78527 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
PRKDCP78527 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC9.9□□□□□ -0.82
PRKDCP78527 DKFZP434H168-201ENST00000567381 1905 ntBASIC9.9□□□□□ -0.82
PRKDCP78527 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
PRKDCP78527 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
PRKDCP78527 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
PRKDCP78527 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
PRKDCP78527 GEMIN8-203ENST00000398355 1119 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
PRKDCP78527 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
PRKDCP78527 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC9.9□□□□□ -0.82
PRKDCP78527 SEC11A-203ENST00000558134 971 ntTSL 3 BASIC9.9□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms