Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
RNF4P78317 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.38□□□□□ -0.27
RNF4P78317 TSPY25P-201ENST00000429463 745 ntBASIC13.38□□□□□ -0.27
RNF4P78317 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.38□□□□□ -0.27
RNF4P78317 AC120057.1-201ENST00000483947 663 ntBASIC13.38□□□□□ -0.27
RNF4P78317 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.38□□□□□ -0.27
RNF4P78317 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.38□□□□□ -0.27
RNF4P78317 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
RNF4P78317 AC140658.4-201ENST00000561990 352 ntBASIC13.38□□□□□ -0.27
RNF4P78317 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 MIR3188-201ENST00000583494 85 ntBASIC13.38□□□□□ -0.27
RNF4P78317 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.38□□□□□ -0.27
RNF4P78317 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC13.38□□□□□ -0.27
RNF4P78317 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 AP001505.2-201ENST00000616815 443 ntBASIC13.38□□□□□ -0.27
RNF4P78317 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.38□□□□□ -0.27
RNF4P78317 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.38□□□□□ -0.27
RNF4P78317 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.38□□□□□ -0.27
RNF4P78317 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
RNF4P78317 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 AC008132.1-202ENST00000342005 1389 ntBASIC13.37□□□□□ -0.27
RNF4P78317 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
RNF4P78317 AC239868.1-201ENST00000369385 493 ntBASIC13.37□□□□□ -0.27
RNF4P78317 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 AL596276.2-201ENST00000447525 331 ntBASIC13.37□□□□□ -0.27
RNF4P78317 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.37□□□□□ -0.27
RNF4P78317 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 AC012617.1-204ENST00000586340 2305 ntBASIC13.37□□□□□ -0.27
RNF4P78317 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 AC079781.5-202ENST00000641784 3743 ntBASIC13.37□□□□□ -0.27
RNF4P78317 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
RNF4P78317 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNF4P78317 AP002353.1-201ENST00000528257 1599 ntBASIC13.37□□□□□ -0.27
RNF4P78317 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.37□□□□□ -0.27
RNF4P78317 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.36□□□□□ -0.27
RNF4P78317 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
RNF4P78317 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RNF4P78317 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNF4P78317 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms