Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 AC025048.6-201ENST00000634326 1161 ntBASIC14.17□□□□□ -0.14
CDH13P55290 AC006453.4-201ENST00000636949 1252 ntBASIC14.17□□□□□ -0.14
CDH13P55290 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.17□□□□□ -0.14
CDH13P55290 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 DMBT1P1-203ENST00000636837 4628 ntBASIC14.17□□□□□ -0.14
CDH13P55290 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CDH13P55290 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.17□□□□□ -0.14
CDH13P55290 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 AC005014.1-201ENST00000432006 2976 ntBASIC14.17□□□□□ -0.14
CDH13P55290 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CDH13P55290 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.17□□□□□ -0.14
CDH13P55290 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CDH13P55290 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CDH13P55290 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC14.17□□□□□ -0.14
CDH13P55290 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH13P55290 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 AL928654.5-201ENST00000624831 2501 ntBASIC14.16□□□□□ -0.14
CDH13P55290 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.16□□□□□ -0.14
CDH13P55290 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.16□□□□□ -0.14
CDH13P55290 AC016694.1-201ENST00000434179 700 ntBASIC14.16□□□□□ -0.14
CDH13P55290 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.16□□□□□ -0.14
CDH13P55290 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH13P55290 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CDH13P55290 AC132938.2-201ENST00000579188 680 ntBASIC14.16□□□□□ -0.14
CDH13P55290 RN7SL713P-201ENST00000582127 302 ntBASIC14.16□□□□□ -0.14
CDH13P55290 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 AC015936.2-201ENST00000593177 259 ntBASIC14.16□□□□□ -0.14
CDH13P55290 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 AC233724.13-201ENST00000598383 410 ntBASIC14.16□□□□□ -0.14
CDH13P55290 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH13P55290 AL022328.1-201ENST00000610050 478 ntBASIC14.16□□□□□ -0.14
CDH13P55290 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.16□□□□□ -0.14
CDH13P55290 AL591163.1-201ENST00000641757 987 ntBASIC14.16□□□□□ -0.14
CDH13P55290 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 KRT8P4-201ENST00000509735 1454 ntBASIC14.16□□□□□ -0.14
CDH13P55290 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CDH13P55290 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CDH13P55290 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH13P55290 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH13P55290 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDH13P55290 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDH13P55290 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDH13P55290 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.15□□□□□ -0.14
CDH13P55290 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.15□□□□□ -0.14
CDH13P55290 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDH13P55290 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDH13P55290 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDH13P55290 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms