Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
VCPP55072 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
VCPP55072 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
VCPP55072 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 AC004899.1-201ENST00000424687 1714 ntBASIC15.51■□□□□ 0.07
VCPP55072 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.51■□□□□ 0.07
VCPP55072 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.51■□□□□ 0.07
VCPP55072 MESTP3-201ENST00000503460 968 ntBASIC15.51■□□□□ 0.07
VCPP55072 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VCPP55072 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
VCPP55072 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
VCPP55072 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 AP001527.2-201ENST00000614441 631 ntBASIC15.51■□□□□ 0.07
VCPP55072 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC15.51■□□□□ 0.07
VCPP55072 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 AC011840.2-201ENST00000563063 1520 ntBASIC15.51■□□□□ 0.07
VCPP55072 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.51■□□□□ 0.07
VCPP55072 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VCPP55072 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCPP55072 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.51■□□□□ 0.07
VCPP55072 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.51■□□□□ 0.07
VCPP55072 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VCPP55072 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VCPP55072 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 FAU-202ENST00000434372 533 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 PIN4P1-201ENST00000451079 396 ntBASIC15.5■□□□□ 0.07
VCPP55072 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.5■□□□□ 0.07
VCPP55072 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 RBM8B-201ENST00000555532 525 ntBASIC15.5■□□□□ 0.07
VCPP55072 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.5■□□□□ 0.07
VCPP55072 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC15.5■□□□□ 0.07
VCPP55072 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.5■□□□□ 0.07
VCPP55072 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 TBC1D3J-201ENST00000620719 1426 ntBASIC15.5■□□□□ 0.07
VCPP55072 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCPP55072 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
VCPP55072 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.5■□□□□ 0.07
VCPP55072 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.49■□□□□ 0.07
VCPP55072 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VCPP55072 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.49■□□□□ 0.07
VCPP55072 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VCPP55072 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC15.49■□□□□ 0.07
VCPP55072 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
VCPP55072 AC005840.4-201ENST00000541242 2494 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms