Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 MARK2P16-201ENST00000605714 1723 ntBASIC15.21■□□□□ 0.03
LHX1P48742 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC15.21■□□□□ 0.03
LHX1P48742 AL513477.1-201ENST00000602865 2407 ntBASIC15.21■□□□□ 0.03
LHX1P48742 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.21■□□□□ 0.03
LHX1P48742 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
LHX1P48742 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 MIR557-201ENST00000385239 98 ntBASIC15.21■□□□□ 0.03
LHX1P48742 AL627231.1-201ENST00000394467 1125 ntBASIC15.21■□□□□ 0.03
LHX1P48742 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 RPL8P2-201ENST00000430538 502 ntBASIC15.21■□□□□ 0.03
LHX1P48742 EEF1DP6-201ENST00000449232 372 ntBASIC15.21■□□□□ 0.03
LHX1P48742 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LHX1P48742 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
LHX1P48742 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
LHX1P48742 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.21■□□□□ 0.03
LHX1P48742 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.02
LHX1P48742 CAP2P1-201ENST00000557743 1390 ntBASIC15.21■□□□□ 0.02
LHX1P48742 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.21■□□□□ 0.02
LHX1P48742 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
LHX1P48742 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LHX1P48742 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LHX1P48742 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LHX1P48742 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
LHX1P48742 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
LHX1P48742 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.21■□□□□ 0.02
LHX1P48742 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LHX1P48742 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 RPL13AP3-202ENST00000494676 1473 ntBASIC15.2■□□□□ 0.02
LHX1P48742 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LHX1P48742 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.2■□□□□ 0.02
LHX1P48742 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.2■□□□□ 0.02
LHX1P48742 OR8T1P-201ENST00000421347 918 ntBASIC15.2■□□□□ 0.02
LHX1P48742 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.2■□□□□ 0.02
LHX1P48742 ALG1L13P-202ENST00000519320 584 ntBASIC15.2■□□□□ 0.02
LHX1P48742 AC079328.1-201ENST00000560358 952 ntBASIC15.2■□□□□ 0.02
LHX1P48742 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.2■□□□□ 0.02
LHX1P48742 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.2■□□□□ 0.02
LHX1P48742 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.2■□□□□ 0.02
LHX1P48742 SIGLEC18P-201ENST00000602271 909 ntBASIC15.2■□□□□ 0.02
LHX1P48742 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LHX1P48742 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.2■□□□□ 0.02
LHX1P48742 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LHX1P48742 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
LHX1P48742 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LHX1P48742 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LHX1P48742 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
LHX1P48742 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LHX1P48742 SHMT1P1-201ENST00000419974 1312 ntBASIC15.19■□□□□ 0.02
LHX1P48742 LINC00115-201ENST00000473798 1317 ntBASIC15.19■□□□□ 0.02
LHX1P48742 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
LHX1P48742 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LHX1P48742 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LHX1P48742 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LHX1P48742 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.19■□□□□ 0.02
LHX1P48742 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LHX1P48742 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms