Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
PTPN9P43378 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 TSPY25P-201ENST00000429463 745 ntBASIC14.95□□□□□ -0.02
PTPN9P43378 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.95□□□□□ -0.02
PTPN9P43378 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 AC125604.1-201ENST00000496255 707 ntBASIC14.95□□□□□ -0.02
PTPN9P43378 RCC2P8-201ENST00000502779 1035 ntBASIC14.95□□□□□ -0.02
PTPN9P43378 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.95□□□□□ -0.02
PTPN9P43378 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 AL451050.2-201ENST00000606967 682 ntBASIC14.95□□□□□ -0.02
PTPN9P43378 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 MIR6869-201ENST00000619434 62 ntBASIC14.95□□□□□ -0.02
PTPN9P43378 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 AC005840.4-201ENST00000541242 2494 ntBASIC14.95□□□□□ -0.02
PTPN9P43378 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
PTPN9P43378 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN9P43378 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN9P43378 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.95□□□□□ -0.02
PTPN9P43378 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
PTPN9P43378 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
PTPN9P43378 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PTPN9P43378 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.94□□□□□ -0.02
PTPN9P43378 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PTPN9P43378 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 FAM86MP-201ENST00000340703 885 ntBASIC14.94□□□□□ -0.02
PTPN9P43378 HMGA1P1-201ENST00000415560 1062 ntBASIC14.94□□□□□ -0.02
PTPN9P43378 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN9P43378 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 AC091804.1-201ENST00000486888 567 ntBASIC14.94□□□□□ -0.02
PTPN9P43378 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN9P43378 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN9P43378 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.94□□□□□ -0.02
PTPN9P43378 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.94□□□□□ -0.02
PTPN9P43378 MIR3188-201ENST00000583494 85 ntBASIC14.94□□□□□ -0.02
PTPN9P43378 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.94□□□□□ -0.02
PTPN9P43378 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.94□□□□□ -0.02
PTPN9P43378 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.94□□□□□ -0.02
PTPN9P43378 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN9P43378 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN9P43378 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms