Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC023906.1-201ENST00000486386 453 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC12.61□□□□□ -0.39
COL8A1P27658 ALG1L3P-201ENST00000503331 765 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC12.61□□□□□ -0.39
COL8A1P27658 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC12.61□□□□□ -0.39
COL8A1P27658 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC12.61□□□□□ -0.39
COL8A1P27658 AC008972.2-201ENST00000606587 494 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC12.61□□□□□ -0.39
COL8A1P27658 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 ST5-261ENST00000626808 1071 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 AC099063.4-201ENST00000641099 1602 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 PHB-210ENST00000511832 1509 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC12.61□□□□□ -0.39
COL8A1P27658 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 AC022532.1-201ENST00000624563 1728 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 AF274858.1-201ENST00000406288 372 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.6□□□□□ -0.39
COL8A1P27658 HNRNPA1P27-201ENST00000412087 955 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 AC010740.1-201ENST00000417035 684 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC12.6□□□□□ -0.39
COL8A1P27658 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC12.6□□□□□ -0.39
COL8A1P27658 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 RN7SL277P-201ENST00000481521 288 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC12.6□□□□□ -0.39
COL8A1P27658 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC12.6□□□□□ -0.39
COL8A1P27658 AL590235.1-201ENST00000564650 861 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 MED11-202ENST00000573708 802 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 RN7SL440P-201ENST00000577855 343 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
COL8A1P27658 AC011462.4-201ENST00000616866 449 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC12.6□□□□□ -0.39
COL8A1P27658 LINC00244-201ENST00000625073 613 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 AC009145.4-201ENST00000625119 1294 ntBASIC12.6□□□□□ -0.39
COL8A1P27658 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.6□□□□□ -0.39
COL8A1P27658 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
COL8A1P27658 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL8A1P27658 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms