Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 AC091046.1-201ENST00000331871 207 ntBASIC15.19■□□□□ 0.02
BDNFP23560 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.19■□□□□ 0.02
BDNFP23560 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 BANF1P3-201ENST00000412556 261 ntBASIC15.19■□□□□ 0.02
BDNFP23560 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.19■□□□□ 0.02
BDNFP23560 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.19■□□□□ 0.02
BDNFP23560 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.19■□□□□ 0.02
BDNFP23560 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.19■□□□□ 0.02
BDNFP23560 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.19■□□□□ 0.02
BDNFP23560 AC093752.3-201ENST00000567343 901 ntBASIC15.19■□□□□ 0.02
BDNFP23560 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.19■□□□□ 0.02
BDNFP23560 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
BDNFP23560 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.19■□□□□ 0.02
BDNFP23560 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 CCT8L1P-201ENST00000465400 1674 ntBASIC15.19■□□□□ 0.02
BDNFP23560 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 AC005912.2-201ENST00000619492 2400 ntBASIC15.18■□□□□ 0.02
BDNFP23560 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 RPL8P2-201ENST00000430538 502 ntBASIC15.18■□□□□ 0.02
BDNFP23560 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 EEF1DP6-201ENST00000449232 372 ntBASIC15.18■□□□□ 0.02
BDNFP23560 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 RN7SL67P-201ENST00000492147 296 ntBASIC15.18■□□□□ 0.02
BDNFP23560 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
BDNFP23560 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.18■□□□□ 0.02
BDNFP23560 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 AC016629.1-201ENST00000596579 586 ntBASIC15.18■□□□□ 0.02
BDNFP23560 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 FAM90A2P-201ENST00000511144 1395 ntBASIC15.18■□□□□ 0.02
BDNFP23560 FAM90A25P-201ENST00000528404 1395 ntBASIC15.18■□□□□ 0.02
BDNFP23560 CAP2P1-201ENST00000557743 1390 ntBASIC15.18■□□□□ 0.02
BDNFP23560 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.18■□□□□ 0.02
BDNFP23560 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.18■□□□□ 0.02
BDNFP23560 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
BDNFP23560 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
BDNFP23560 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
BDNFP23560 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms