Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC105206.1-202ENST00000314927 2368 ntBASIC14.17□□□□□ -0.14
PCNAP12004 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 CD8B2-202ENST00000417670 633 ntBASIC14.17□□□□□ -0.14
PCNAP12004 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.17□□□□□ -0.14
PCNAP12004 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 AC234783.1-201ENST00000441761 496 ntBASIC14.17□□□□□ -0.14
PCNAP12004 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 CR383656.12-201ENST00000549567 513 ntBASIC14.17□□□□□ -0.14
PCNAP12004 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 RN7SL713P-201ENST00000582127 302 ntBASIC14.17□□□□□ -0.14
PCNAP12004 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.17□□□□□ -0.14
PCNAP12004 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 AC073413.1-201ENST00000603927 732 ntBASIC14.17□□□□□ -0.14
PCNAP12004 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 AP001002.3-201ENST00000623482 206 ntBASIC14.17□□□□□ -0.14
PCNAP12004 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PCNAP12004 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 AHCYP2-201ENST00000430630 1300 ntBASIC14.16□□□□□ -0.14
PCNAP12004 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
PCNAP12004 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 PDIA3P1-201ENST00000471856 1510 ntBASIC14.16□□□□□ -0.14
PCNAP12004 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.16□□□□□ -0.14
PCNAP12004 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 AC090505.1-201ENST00000430515 1834 ntBASIC14.16□□□□□ -0.14
PCNAP12004 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.16□□□□□ -0.14
PCNAP12004 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.16□□□□□ -0.14
PCNAP12004 ALG3P1-201ENST00000508806 1114 ntBASIC14.16□□□□□ -0.14
PCNAP12004 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
PCNAP12004 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.16□□□□□ -0.14
PCNAP12004 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 RHOXF1P1-202ENST00000635473 501 ntBASIC14.16□□□□□ -0.14
PCNAP12004 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 KHSRPP1-201ENST00000427983 1768 ntBASIC14.16□□□□□ -0.14
PCNAP12004 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PCNAP12004 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PCNAP12004 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PCNAP12004 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.15□□□□□ -0.14
PCNAP12004 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.15□□□□□ -0.14
PCNAP12004 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.15□□□□□ -0.14
PCNAP12004 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCNAP12004 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.15□□□□□ -0.14
PCNAP12004 AC099521.3-201ENST00000624251 2938 ntBASIC14.15□□□□□ -0.14
PCNAP12004 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PCNAP12004 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms