Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CST2-201ENST00000304725 748 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 Z84721.1-201ENST00000438841 372 ntBASIC6.2□□□□□ -1.42
USH2AO75445 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USH2AO75445 PDPN-208ENST00000509009 571 ntTSL 4 BASIC6.2□□□□□ -1.42
USH2AO75445 DHRS7-202ENST00000536410 1194 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 PXN-AS1-205ENST00000542314 707 ntTSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 MIR4726-201ENST00000615971 58 ntBASIC6.2□□□□□ -1.42
USH2AO75445 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
USH2AO75445 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
USH2AO75445 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 AC073316.2-201ENST00000414126 418 ntTSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 AC007690.1-201ENST00000451924 468 ntBASIC6.2□□□□□ -1.42
USH2AO75445 AC113398.1-201ENST00000464124 406 ntBASIC6.2□□□□□ -1.42
USH2AO75445 AC104115.1-201ENST00000484005 623 ntBASIC6.2□□□□□ -1.42
USH2AO75445 EEF1GP2-201ENST00000509352 1243 ntBASIC6.2□□□□□ -1.42
USH2AO75445 FAM187B2P-201ENST00000577135 713 ntBASIC6.2□□□□□ -1.42
USH2AO75445 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC6.2□□□□□ -1.42
USH2AO75445 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
USH2AO75445 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 AC136621.1-201ENST00000624017 2304 ntBASIC6.2□□□□□ -1.42
USH2AO75445 NOS2P3-201ENST00000411468 867 ntBASIC6.2□□□□□ -1.42
USH2AO75445 NOS2P2-201ENST00000426269 867 ntBASIC6.2□□□□□ -1.42
USH2AO75445 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC6.2□□□□□ -1.42
USH2AO75445 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 AC112250.1-201ENST00000504640 745 ntBASIC6.2□□□□□ -1.42
USH2AO75445 PIMREG-209ENST00000576056 833 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
USH2AO75445 HNRNPA1P11-201ENST00000580106 956 ntBASIC6.2□□□□□ -1.42
USH2AO75445 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 AC104506.1-201ENST00000609247 429 ntBASIC6.2□□□□□ -1.42
USH2AO75445 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC6.2□□□□□ -1.42
USH2AO75445 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
USH2AO75445 STK16-202ENST00000409260 1493 ntTSL 5 BASIC6.2□□□□□ -1.42
USH2AO75445 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
USH2AO75445 DLX4-206ENST00000611342 1662 ntBASIC6.19□□□□□ -1.42
USH2AO75445 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 USP28-214ENST00000545540 3431 ntTSL 2 BASIC6.19□□□□□ -1.42
USH2AO75445 RTP2-201ENST00000358241 1346 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC6.19□□□□□ -1.42
USH2AO75445 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 PPP3CB-AS1-201ENST00000422977 930 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 AC105443.1-201ENST00000433754 712 ntBASIC6.19□□□□□ -1.42
USH2AO75445 MT3-202ENST00000561640 514 ntTSL 3 BASIC6.19□□□□□ -1.42
USH2AO75445 SALL4P6-201ENST00000429385 1691 ntBASIC6.19□□□□□ -1.42
USH2AO75445 SFPQP1-201ENST00000446621 1786 ntBASIC6.19□□□□□ -1.42
USH2AO75445 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC6.19□□□□□ -1.42
USH2AO75445 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC6.19□□□□□ -1.42
USH2AO75445 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC6.19□□□□□ -1.42
USH2AO75445 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC6.19□□□□□ -1.42
USH2AO75445 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC6.19□□□□□ -1.42
USH2AO75445 AC074366.1-204ENST00000446277 552 ntTSL 3 BASIC6.19□□□□□ -1.42
USH2AO75445 RPSAP16-201ENST00000447583 821 ntBASIC6.19□□□□□ -1.42
USH2AO75445 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC6.19□□□□□ -1.42
USH2AO75445 TPI1P2-201ENST00000491343 752 ntBASIC6.19□□□□□ -1.42
USH2AO75445 PRDX2P3-201ENST00000515779 586 ntBASIC6.19□□□□□ -1.42
USH2AO75445 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC6.19□□□□□ -1.42
USH2AO75445 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
USH2AO75445 AC069366.2-201ENST00000583643 430 ntBASIC6.19□□□□□ -1.42
USH2AO75445 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC6.19□□□□□ -1.42
USH2AO75445 CYP4F10P-201ENST00000589560 752 ntBASIC6.19□□□□□ -1.42
USH2AO75445 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC6.19□□□□□ -1.42
USH2AO75445 AC073592.10-201ENST00000624789 597 ntBASIC6.19□□□□□ -1.42
USH2AO75445 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC6.19□□□□□ -1.42
USH2AO75445 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
USH2AO75445 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC6.19□□□□□ -1.42
USH2AO75445 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USH2AO75445 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms