Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
SSSCA1O60232 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC11.83□□□□□ -0.51
SSSCA1O60232 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
SSSCA1O60232 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC11.83□□□□□ -0.51
SSSCA1O60232 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC125807.2-201ENST00000513358 3514 ntBASIC11.83□□□□□ -0.52
SSSCA1O60232 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC11.83□□□□□ -0.52
SSSCA1O60232 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.83□□□□□ -0.52
SSSCA1O60232 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.83□□□□□ -0.52
SSSCA1O60232 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC11.83□□□□□ -0.52
SSSCA1O60232 DNAJB3-201ENST00000446806 729 ntBASIC11.83□□□□□ -0.52
SSSCA1O60232 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC103988.2-201ENST00000561804 725 ntBASIC11.83□□□□□ -0.52
SSSCA1O60232 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC11.83□□□□□ -0.52
SSSCA1O60232 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 AL391069.4-201ENST00000609583 481 ntBASIC11.83□□□□□ -0.52
SSSCA1O60232 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC11.83□□□□□ -0.52
SSSCA1O60232 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.83□□□□□ -0.52
SSSCA1O60232 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 AC087499.5-201ENST00000452760 1342 ntBASIC11.83□□□□□ -0.52
SSSCA1O60232 AL928654.5-201ENST00000624831 2501 ntBASIC11.83□□□□□ -0.52
SSSCA1O60232 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC11.83□□□□□ -0.52
SSSCA1O60232 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SSSCA1O60232 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
SSSCA1O60232 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC11.82□□□□□ -0.52
SSSCA1O60232 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
SSSCA1O60232 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC11.82□□□□□ -0.52
SSSCA1O60232 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC11.82□□□□□ -0.52
SSSCA1O60232 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC11.82□□□□□ -0.52
SSSCA1O60232 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 AL122018.1-201ENST00000446607 2310 ntBASIC11.82□□□□□ -0.52
SSSCA1O60232 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC11.82□□□□□ -0.52
SSSCA1O60232 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
SSSCA1O60232 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 LRRC59-203ENST00000576448 1531 ntBASIC11.82□□□□□ -0.52
SSSCA1O60232 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
SSSCA1O60232 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.82□□□□□ -0.52
SSSCA1O60232 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
SSSCA1O60232 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SSSCA1O60232 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC11.82□□□□□ -0.52
SSSCA1O60232 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms