Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 AC015802.1-201ENST00000588104 1449 ntBASIC15.26■□□□□ 0.03
PAAF1Q9BRP4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 MIR2392-201ENST00000584881 84 ntBASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 AC007952.5-201ENST00000572818 1486 ntBASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PAAF1Q9BRP4 FER1L4-210ENST00000615531 5998 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 TEKT4P2-202ENST00000559466 1312 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 PYY2-201ENST00000315776 282 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 RN7SKP109-201ENST00000410592 316 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AL354861.1-201ENST00000445213 355 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AC018463.1-201ENST00000456674 917 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 NAA40-205ENST00000539656 577 ntTSL 4 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 KLF17P1-201ENST00000547105 1126 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AL512310.5-201ENST00000551999 515 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SIGLEC22P-201ENST00000599104 714 ntBASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PAAF1Q9BRP4 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms