Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 AC006987.1-201ENST00000413610 527 ntBASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 AL954722.1-201ENST00000431238 259 ntBASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 RN7SL838P-201ENST00000481676 295 ntBASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 AL132994.1-201ENST00000554098 400 ntBASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 ABCC6P1-203ENST00000565566 1170 ntBASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 AL136982.5-201ENST00000605222 294 ntBASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 LINC02447-202ENST00000501888 2146 ntBASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AC026884.1-201ENST00000418296 457 ntBASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 DPY19L2P4-201ENST00000479881 442 ntBASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AL365209.1-201ENST00000624418 6473 ntBASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.94■□□□□ 0.3
SMC1BQ8NDV3 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 AC105917.1-201ENST00000506637 2539 ntBASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 AIG1-203ENST00000367596 559 ntTSL 2 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 AL359092.2-201ENST00000423330 585 ntBASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 HMGA1P2-201ENST00000430198 324 ntBASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 RNASEH2CP1-201ENST00000454281 502 ntBASIC16.93■□□□□ 0.3
SMC1BQ8NDV3 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms