Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 YY1P1-201ENST00000427625 668 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 HLA-V-201ENST00000429037 534 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 INE1-201ENST00000456273 945 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 AL359881.2-201ENST00000602973 570 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 MIR8072-201ENST00000614241 80 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 AC005785.2-201ENST00000624655 631 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 AL033527.5-201ENST00000641382 801 ntBASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
DEPDC4Q8N2C3 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 GPR53P-205ENST00000457298 1084 ntBASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 FAM86LP-201ENST00000478302 853 ntBASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ELK1P1-201ENST00000485699 580 ntBASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 AC092552.1-201ENST00000547243 906 ntBASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 AC004790.1-201ENST00000612686 536 ntBASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 AC103798.2-201ENST00000624292 632 ntBASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms