Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC88AQ3V6T2 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 AC004801.1-201ENST00000549557 360 ntBASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 AC020931.1-201ENST00000589622 1346 ntBASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC88AQ3V6T2 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 DPY19L2P4-201ENST00000479881 442 ntBASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 PRSS3P1-201ENST00000503996 742 ntBASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 AC079414.2-201ENST00000567157 1104 ntBASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 OR6D1P-202ENST00000641007 5290 ntBASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 MT3-202ENST00000561640 514 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 AC091304.3-201ENST00000566500 716 ntBASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 AC139713.2-207ENST00000641556 1292 ntBASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC88AQ3V6T2 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 NALT1-202ENST00000450304 437 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 SLC25A15P3-201ENST00000505530 290 ntBASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 EEF1GP8-201ENST00000506566 1154 ntBASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms