Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 AC253536.4-201ENST00000440539 267 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 CEP164P1-201ENST00000455142 418 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 LDHBP1-201ENST00000455730 1119 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 AC116345.2-201ENST00000512837 523 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 RTN3P1-201ENST00000536295 711 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 AC012044.1-201ENST00000603431 297 ntBASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC144BQ3MJ40 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 FAM90A7P-201ENST00000382628 1395 ntBASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 FAM90A23P-201ENST00000400136 1395 ntBASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 AC069218.1-201ENST00000435269 762 ntBASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC144BQ3MJ40 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms