Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 MIR1909-201ENST00000411312 80 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC12.97□□□□□ -0.33
CLRN1P58418 AC079178.1-201ENST00000420915 656 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 ACA64.2-201ENST00000459014 129 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC12.97□□□□□ -0.33
CLRN1P58418 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC12.97□□□□□ -0.33
CLRN1P58418 DUX4L46-201ENST00000566845 751 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 AC133552.6-201ENST00000613406 534 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CLRN1P58418 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.96□□□□□ -0.33
CLRN1P58418 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.96□□□□□ -0.33
CLRN1P58418 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CLRN1P58418 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CLRN1P58418 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
CLRN1P58418 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.96□□□□□ -0.33
CLRN1P58418 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.96□□□□□ -0.33
CLRN1P58418 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CLRN1P58418 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC12.96□□□□□ -0.33
CLRN1P58418 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.96□□□□□ -0.33
CLRN1P58418 AC079776.1-201ENST00000401540 1152 ntBASIC12.96□□□□□ -0.33
CLRN1P58418 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.96□□□□□ -0.33
CLRN1P58418 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC12.96□□□□□ -0.33
CLRN1P58418 SNX29P1-201ENST00000548357 1007 ntBASIC12.96□□□□□ -0.33
CLRN1P58418 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC12.96□□□□□ -0.33
CLRN1P58418 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.96□□□□□ -0.33
CLRN1P58418 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.96□□□□□ -0.33
CLRN1P58418 AC132192.2-201ENST00000596206 1147 ntBASIC12.96□□□□□ -0.33
CLRN1P58418 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CLRN1P58418 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
CLRN1P58418 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLRN1P58418 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.96□□□□□ -0.34
CLRN1P58418 MST1P2-201ENST00000457982 2291 ntBASIC12.96□□□□□ -0.34
CLRN1P58418 AL023775.1-201ENST00000454907 1746 ntBASIC12.96□□□□□ -0.34
CLRN1P58418 AL359881.3-201ENST00000602640 1721 ntBASIC12.96□□□□□ -0.34
CLRN1P58418 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
CLRN1P58418 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLRN1P58418 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.96□□□□□ -0.34
CLRN1P58418 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CLRN1P58418 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CLRN1P58418 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC12.95□□□□□ -0.34
CLRN1P58418 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.95□□□□□ -0.34
CLRN1P58418 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC12.95□□□□□ -0.34
CLRN1P58418 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.95□□□□□ -0.34
CLRN1P58418 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CLRN1P58418 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CLRN1P58418 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLRN1P58418 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms