Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC125807.2-201ENST00000513358 3514 ntBASIC16.97■□□□□ 0.31
MRE11P49959 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
MRE11P49959 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MRE11P49959 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
MRE11P49959 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MRE11P49959 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
MRE11P49959 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.97■□□□□ 0.31
MRE11P49959 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MRE11P49959 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
MRE11P49959 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 MPRIPP1-201ENST00000452433 1089 ntBASIC16.97■□□□□ 0.31
MRE11P49959 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.97■□□□□ 0.31
MRE11P49959 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.97■□□□□ 0.31
MRE11P49959 WASH4P-201ENST00000564273 1246 ntBASIC16.97■□□□□ 0.31
MRE11P49959 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.97■□□□□ 0.31
MRE11P49959 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.97■□□□□ 0.31
MRE11P49959 AC106872.11-201ENST00000605838 421 ntBASIC16.97■□□□□ 0.31
MRE11P49959 AC008494.3-201ENST00000606615 944 ntBASIC16.97■□□□□ 0.31
MRE11P49959 MIR6074-201ENST00000612054 107 ntBASIC16.97■□□□□ 0.31
MRE11P49959 AL138828.2-201ENST00000615812 383 ntBASIC16.97■□□□□ 0.31
MRE11P49959 SPDYE12P-201ENST00000618416 771 ntBASIC16.97■□□□□ 0.31
MRE11P49959 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 AL391825.1-201ENST00000457671 1364 ntBASIC16.97■□□□□ 0.31
MRE11P49959 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MRE11P49959 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC16.97■□□□□ 0.31
MRE11P49959 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
MRE11P49959 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC16.97■□□□□ 0.31
MRE11P49959 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC16.97■□□□□ 0.31
MRE11P49959 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC16.97■□□□□ 0.31
MRE11P49959 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MRE11P49959 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.31
MRE11P49959 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.96■□□□□ 0.31
MRE11P49959 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
MRE11P49959 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 AC104989.1-201ENST00000519711 778 ntBASIC16.96■□□□□ 0.31
MRE11P49959 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.96■□□□□ 0.31
MRE11P49959 AC008738.7-201ENST00000609744 511 ntBASIC16.96■□□□□ 0.31
MRE11P49959 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
MRE11P49959 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 STK3-218ENST00000617590 2485 ntTSL 5 BASIC16.96■□□□□ 0.31
MRE11P49959 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MRE11P49959 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
MRE11P49959 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MRE11P49959 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MRE11P49959 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 AGAP12P-201ENST00000585227 2359 ntBASIC16.95■□□□□ 0.3
MRE11P49959 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms