Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 AL158070.2-201ENST00000623713 1621 ntBASIC15.34■□□□□ 0.05
LIG3P49916 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
LIG3P49916 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
LIG3P49916 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LIG3P49916 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC15.34■□□□□ 0.05
LIG3P49916 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIG3P49916 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.33■□□□□ 0.05
LIG3P49916 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.33■□□□□ 0.05
LIG3P49916 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIG3P49916 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC15.33■□□□□ 0.05
LIG3P49916 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
LIG3P49916 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
LIG3P49916 PDIA3P1-201ENST00000471856 1510 ntBASIC15.33■□□□□ 0.05
LIG3P49916 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.33■□□□□ 0.05
LIG3P49916 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LIG3P49916 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LIG3P49916 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
LIG3P49916 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC15.33■□□□□ 0.04
LIG3P49916 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LIG3P49916 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LIG3P49916 KLF2P2-201ENST00000416807 1039 ntBASIC15.33■□□□□ 0.04
LIG3P49916 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
LIG3P49916 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.33■□□□□ 0.04
LIG3P49916 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
LIG3P49916 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.33■□□□□ 0.04
LIG3P49916 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.33■□□□□ 0.04
LIG3P49916 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LIG3P49916 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LIG3P49916 MIR6775-201ENST00000617557 69 ntBASIC15.33■□□□□ 0.04
LIG3P49916 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC15.33■□□□□ 0.04
LIG3P49916 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC15.33■□□□□ 0.04
LIG3P49916 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
LIG3P49916 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LIG3P49916 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.33■□□□□ 0.04
LIG3P49916 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 AL645937.2-201ENST00000396808 931 ntBASIC15.32■□□□□ 0.04
LIG3P49916 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 AC007551.1-201ENST00000457394 519 ntBASIC15.32■□□□□ 0.04
LIG3P49916 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.32■□□□□ 0.04
LIG3P49916 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 FTH1P14-201ENST00000482930 551 ntBASIC15.32■□□□□ 0.04
LIG3P49916 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 AC104989.1-201ENST00000519711 778 ntBASIC15.32■□□□□ 0.04
LIG3P49916 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.32■□□□□ 0.04
LIG3P49916 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms