Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.31□□□□□ -0.28
RFC3P40938 AC007274.2-201ENST00000421675 662 ntBASIC13.31□□□□□ -0.28
RFC3P40938 AC078875.1-201ENST00000431907 724 ntBASIC13.31□□□□□ -0.28
RFC3P40938 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 HLA-DPB2-205ENST00000435074 1188 ntBASIC13.31□□□□□ -0.28
RFC3P40938 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.31□□□□□ -0.28
RFC3P40938 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 IGLV3-15-201ENST00000518356 244 ntBASIC13.31□□□□□ -0.28
RFC3P40938 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.31□□□□□ -0.28
RFC3P40938 RTN3P1-201ENST00000536295 711 ntBASIC13.31□□□□□ -0.28
RFC3P40938 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 AL161670.2-201ENST00000557650 1227 ntBASIC13.31□□□□□ -0.28
RFC3P40938 AC012044.1-201ENST00000603431 297 ntBASIC13.31□□□□□ -0.28
RFC3P40938 AL157813.1-201ENST00000612996 587 ntBASIC13.31□□□□□ -0.28
RFC3P40938 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
RFC3P40938 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 KRT8P28-201ENST00000433288 1390 ntBASIC13.31□□□□□ -0.28
RFC3P40938 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RFC3P40938 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 KRT8P21-201ENST00000430398 1491 ntBASIC13.3□□□□□ -0.28
RFC3P40938 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.3□□□□□ -0.28
RFC3P40938 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.3□□□□□ -0.28
RFC3P40938 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 AC116345.2-201ENST00000512837 523 ntBASIC13.3□□□□□ -0.28
RFC3P40938 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC13.3□□□□□ -0.28
RFC3P40938 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 AC103988.2-201ENST00000561804 725 ntBASIC13.3□□□□□ -0.28
RFC3P40938 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 MIR3907-201ENST00000579424 151 ntBASIC13.3□□□□□ -0.28
RFC3P40938 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.3□□□□□ -0.28
RFC3P40938 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
RFC3P40938 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.3□□□□□ -0.28
RFC3P40938 AC133540.1-201ENST00000620845 1019 ntBASIC13.3□□□□□ -0.28
RFC3P40938 LINC00552-201ENST00000625151 2579 ntBASIC13.3□□□□□ -0.28
RFC3P40938 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.3□□□□□ -0.28
RFC3P40938 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RFC3P40938 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
RFC3P40938 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.3□□□□□ -0.28
RFC3P40938 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RFC3P40938 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.3□□□□□ -0.28
RFC3P40938 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RFC3P40938 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.29□□□□□ -0.28
RFC3P40938 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RFC3P40938 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms