Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC18.31■□□□□ 0.52
COL18A1P39060 AC233724.9-201ENST00000511694 407 ntBASIC18.31■□□□□ 0.52
COL18A1P39060 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC18.31■□□□□ 0.52
COL18A1P39060 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 AC009041.4-201ENST00000620075 638 ntBASIC18.31■□□□□ 0.52
COL18A1P39060 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.31■□□□□ 0.52
COL18A1P39060 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 HSPA7-201ENST00000445535 1927 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC18.3■□□□□ 0.52
COL18A1P39060 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC18.3■□□□□ 0.52
COL18A1P39060 AL773545.2-201ENST00000442149 472 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 SNRPD2P2-201ENST00000473818 333 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC18.3■□□□□ 0.52
COL18A1P39060 METTL7AP1-201ENST00000547343 496 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 GRAMD4P6-201ENST00000556999 244 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC18.3■□□□□ 0.52
COL18A1P39060 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 HDGF-202ENST00000368206 960 ntTSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL18A1P39060 AP000920.1-201ENST00000531824 344 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL18A1P39060 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC18.3■□□□□ 0.52
COL18A1P39060 AC004466.2-201ENST00000614749 516 ntBASIC18.3■□□□□ 0.52
COL18A1P39060 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC18.3■□□□□ 0.52
COL18A1P39060 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC18.29■□□□□ 0.52
COL18A1P39060 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC18.29■□□□□ 0.52
COL18A1P39060 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC18.29■□□□□ 0.52
COL18A1P39060 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC18.29■□□□□ 0.52
COL18A1P39060 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL18A1P39060 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC18.29■□□□□ 0.52
COL18A1P39060 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC18.29■□□□□ 0.52
COL18A1P39060 RCC2P5-201ENST00000492126 1487 ntBASIC18.29■□□□□ 0.52
COL18A1P39060 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC18.29■□□□□ 0.52
COL18A1P39060 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC18.28■□□□□ 0.52
COL18A1P39060 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL18A1P39060 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC18.28■□□□□ 0.52
COL18A1P39060 HNRNPA3P12-201ENST00000437410 1063 ntBASIC18.28■□□□□ 0.52
COL18A1P39060 RPL29P2-201ENST00000488409 460 ntBASIC18.28■□□□□ 0.52
COL18A1P39060 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC18.28■□□□□ 0.52
COL18A1P39060 NDUFB2P1-201ENST00000506966 295 ntBASIC18.28■□□□□ 0.52
COL18A1P39060 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC18.28■□□□□ 0.52
COL18A1P39060 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC18.28■□□□□ 0.52
COL18A1P39060 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL18A1P39060 OS9-207ENST00000439210 1946 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.28■□□□□ 0.52
COL18A1P39060 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL18A1P39060 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms