Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC16.44■□□□□ 0.22
SCN4AP35499 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.44■□□□□ 0.22
SCN4AP35499 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.44■□□□□ 0.22
SCN4AP35499 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SCN4AP35499 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC16.44■□□□□ 0.22
SCN4AP35499 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC16.44■□□□□ 0.22
SCN4AP35499 AC104117.4-201ENST00000521486 847 ntBASIC16.44■□□□□ 0.22
SCN4AP35499 PCTP-206ENST00000573500 919 ntTSL 3 BASIC16.44■□□□□ 0.22
SCN4AP35499 AC063977.2-201ENST00000601996 421 ntBASIC16.44■□□□□ 0.22
SCN4AP35499 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC16.44■□□□□ 0.22
SCN4AP35499 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 AC148476.1-201ENST00000622182 705 ntBASIC16.44■□□□□ 0.22
SCN4AP35499 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SCN4AP35499 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SCN4AP35499 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.44■□□□□ 0.22
SCN4AP35499 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 GUCY2EP-203ENST00000531117 1918 ntBASIC16.44■□□□□ 0.22
SCN4AP35499 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SCN4AP35499 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.43■□□□□ 0.22
SCN4AP35499 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC16.43■□□□□ 0.22
SCN4AP35499 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC16.43■□□□□ 0.22
SCN4AP35499 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.43■□□□□ 0.22
SCN4AP35499 RN7SL33P-201ENST00000462543 342 ntBASIC16.43■□□□□ 0.22
SCN4AP35499 AL450346.2-201ENST00000495602 1024 ntBASIC16.43■□□□□ 0.22
SCN4AP35499 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.43■□□□□ 0.22
SCN4AP35499 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC16.43■□□□□ 0.22
SCN4AP35499 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC16.43■□□□□ 0.22
SCN4AP35499 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SCN4AP35499 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC16.43■□□□□ 0.22
SCN4AP35499 AC106785.2-201ENST00000564385 1319 ntBASIC16.43■□□□□ 0.22
SCN4AP35499 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.43■□□□□ 0.22
SCN4AP35499 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
SCN4AP35499 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCN4AP35499 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.43■□□□□ 0.22
SCN4AP35499 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SCN4AP35499 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 DUX4L31-201ENST00000446466 1136 ntBASIC16.42■□□□□ 0.22
SCN4AP35499 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 CCNL2P1-201ENST00000512846 969 ntBASIC16.42■□□□□ 0.22
SCN4AP35499 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC16.42■□□□□ 0.22
SCN4AP35499 AC005332.2-201ENST00000590010 930 ntBASIC16.42■□□□□ 0.22
SCN4AP35499 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
SCN4AP35499 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SCN4AP35499 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC16.42■□□□□ 0.22
SCN4AP35499 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
SCN4AP35499 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC16.42■□□□□ 0.22
SCN4AP35499 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 RN7SL202P-201ENST00000584410 262 ntBASIC16.42■□□□□ 0.22
SCN4AP35499 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC16.42■□□□□ 0.22
SCN4AP35499 AL139424.3-202ENST00000641619 917 ntBASIC16.42■□□□□ 0.22
SCN4AP35499 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms