Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AL138709.1-201ENST00000614840 1693 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 F10-203ENST00000409306 1450 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC012441.1-201ENST00000446669 685 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 FTLP10-202ENST00000505798 471 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 SORD2P-201ENST00000558556 1069 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 MIR497HG-202ENST00000572453 3838 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 ECM1P1-201ENST00000604092 1279 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 MIR6805-201ENST00000615055 62 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AL365181.3-201ENST00000605886 3222 ntBASIC11.09□□□□□ -0.63
HLA-DMBP28068 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
HLA-DMBP28068 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
HLA-DMBP28068 DMBT1P1-203ENST00000636837 4628 ntBASIC11.08□□□□□ -0.63
HLA-DMBP28068 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
HLA-DMBP28068 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
HLA-DMBP28068 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 MIR658-201ENST00000385210 100 ntBASIC11.08□□□□□ -0.64
HLA-DMBP28068 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
HLA-DMBP28068 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms