Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A3P12111 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 AC087163.1-201ENST00000430089 381 ntBASIC14.41□□□□□ -0.1
COL6A3P12111 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 ALG1L14P-201ENST00000514230 434 ntBASIC14.41□□□□□ -0.1
COL6A3P12111 AC069366.2-201ENST00000583643 430 ntBASIC14.41□□□□□ -0.1
COL6A3P12111 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A3P12111 AC011306.1-201ENST00000606639 1275 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 GH2-205ENST00000622506 702 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A3P12111 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL6A3P12111 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL6A3P12111 PTPA-219ENST00000435305 530 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A3P12111 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A3P12111 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
COL6A3P12111 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A3P12111 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A3P12111 AL356583.3-201ENST00000412354 417 ntBASIC14.4□□□□□ -0.1
COL6A3P12111 AL008719.1-201ENST00000430449 473 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 PLA2G6-213ENST00000447598 567 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 AQP7-207ENST00000447660 998 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A3P12111 NREP-218ENST00000509427 587 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
COL6A3P12111 AC021439.1-201ENST00000562975 591 ntTSL 4 BASIC14.4□□□□□ -0.1
COL6A3P12111 SMIM6-202ENST00000579469 957 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 AC093462.1-201ENST00000621167 1683 ntBASIC14.4□□□□□ -0.1
COL6A3P12111 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 AC006372.1-201ENST00000449903 546 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 GULOP-201ENST00000454030 748 ntBASIC14.4□□□□□ -0.1
COL6A3P12111 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 CYP4F10P-201ENST00000589560 752 ntBASIC14.4□□□□□ -0.1
COL6A3P12111 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 CSF2RA-201ENST00000355432 1628 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.4□□□□□ -0.1
COL6A3P12111 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 AC009238.3-201ENST00000512705 217 ntBASIC14.4□□□□□ -0.1
COL6A3P12111 AC022217.2-201ENST00000518941 472 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 IFI27L1-205ENST00000554544 406 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A3P12111 CALM3-206ENST00000594523 540 ntTSL 4 BASIC14.4□□□□□ -0.1
COL6A3P12111 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC14.4□□□□□ -0.1
COL6A3P12111 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
COL6A3P12111 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A3P12111 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A3P12111 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.11
COL6A3P12111 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 CLUHP3-207ENST00000563678 1303 ntBASIC14.39□□□□□ -0.11
COL6A3P12111 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A3P12111 RACK1-227ENST00000512805 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
COL6A3P12111 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 OR4A49P-201ENST00000527050 632 ntBASIC14.39□□□□□ -0.11
COL6A3P12111 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A3P12111 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A3P12111 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 RBMXP1-201ENST00000408004 1191 ntBASIC14.39□□□□□ -0.11
COL6A3P12111 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.39□□□□□ -0.11
COL6A3P12111 AP001102.1-201ENST00000528959 409 ntBASIC14.39□□□□□ -0.11
COL6A3P12111 KIAA1191-211ENST00000533553 560 ntTSL 3 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms