Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.19□□□□□ -0.14
PCNAP12004 CNN2P8-201ENST00000421872 913 ntBASIC14.19□□□□□ -0.14
PCNAP12004 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 PUDPP3-201ENST00000445368 636 ntBASIC14.19□□□□□ -0.14
PCNAP12004 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.19□□□□□ -0.14
PCNAP12004 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 AP003171.2-201ENST00000528208 925 ntBASIC14.19□□□□□ -0.14
PCNAP12004 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.19□□□□□ -0.14
PCNAP12004 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.19□□□□□ -0.14
PCNAP12004 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 BX088702.1-201ENST00000610784 235 ntBASIC14.19□□□□□ -0.14
PCNAP12004 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 AC139712.1-201ENST00000378256 1875 ntBASIC14.18□□□□□ -0.14
PCNAP12004 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 AC130686.1-201ENST00000622936 2466 ntBASIC14.18□□□□□ -0.14
PCNAP12004 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.18□□□□□ -0.14
PCNAP12004 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.18□□□□□ -0.14
PCNAP12004 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.18□□□□□ -0.14
PCNAP12004 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.18□□□□□ -0.14
PCNAP12004 AC103988.2-201ENST00000561804 725 ntBASIC14.18□□□□□ -0.14
PCNAP12004 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 AC011498.7-201ENST00000624986 2027 ntBASIC14.18□□□□□ -0.14
PCNAP12004 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
PCNAP12004 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.18□□□□□ -0.14
PCNAP12004 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 KRT8P4-201ENST00000509735 1454 ntBASIC14.18□□□□□ -0.14
PCNAP12004 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PCNAP12004 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PCNAP12004 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
PCNAP12004 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
PCNAP12004 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PCNAP12004 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PCNAP12004 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms