Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL3A1P02461 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL3A1P02461 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 SNORA50C-201ENST00000408535 133 ntBASIC18.62■□□□□ 0.57
COL3A1P02461 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 AC006529.1-201ENST00000459978 637 ntBASIC18.62■□□□□ 0.57
COL3A1P02461 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC18.62■□□□□ 0.57
COL3A1P02461 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 RN7SL556P-201ENST00000582856 298 ntBASIC18.62■□□□□ 0.57
COL3A1P02461 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.62■□□□□ 0.57
COL3A1P02461 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC18.62■□□□□ 0.57
COL3A1P02461 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 SNORA50.1-201ENST00000628590 135 ntBASIC18.62■□□□□ 0.57
COL3A1P02461 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
COL3A1P02461 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL3A1P02461 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC18.62■□□□□ 0.57
COL3A1P02461 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL3A1P02461 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC18.61■□□□□ 0.57
COL3A1P02461 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
COL3A1P02461 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC18.61■□□□□ 0.57
COL3A1P02461 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC18.61■□□□□ 0.57
COL3A1P02461 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC18.61■□□□□ 0.57
COL3A1P02461 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 AC079112.1-201ENST00000454972 939 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 AC093826.1-201ENST00000508655 993 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 COQ10BP2-201ENST00000513804 724 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 CTBP2P4-201ENST00000513884 920 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC18.61■□□□□ 0.57
COL3A1P02461 AP000322.3-201ENST00000608665 388 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.61■□□□□ 0.57
COL3A1P02461 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL3A1P02461 LINC02486-201ENST00000604157 3000 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC18.61■□□□□ 0.57
COL3A1P02461 AC111170.3-201ENST00000624282 2464 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
COL3A1P02461 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 NRADDP-202ENST00000641269 1585 ntBASIC18.61■□□□□ 0.57
COL3A1P02461 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL3A1P02461 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL3A1P02461 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC18.6■□□□□ 0.57
COL3A1P02461 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC18.6■□□□□ 0.57
COL3A1P02461 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.6■□□□□ 0.57
COL3A1P02461 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.6■□□□□ 0.57
COL3A1P02461 RN7SL470P-201ENST00000583069 259 ntBASIC18.6■□□□□ 0.57
COL3A1P02461 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL3A1P02461 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC18.6■□□□□ 0.57
COL3A1P02461 LINC00244-201ENST00000625073 613 ntBASIC18.6■□□□□ 0.57
COL3A1P02461 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.6■□□□□ 0.57
COL3A1P02461 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC18.6■□□□□ 0.57
COL3A1P02461 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL3A1P02461 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 OS9-207ENST00000439210 1946 ntTSL 2 BASIC18.6■□□□□ 0.57
COL3A1P02461 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 AL627389.1-201ENST00000413508 1182 ntBASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms