Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
SSSCA1O60232 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC11.85□□□□□ -0.51
SSSCA1O60232 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC11.85□□□□□ -0.51
SSSCA1O60232 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.85□□□□□ -0.51
SSSCA1O60232 FAM86LP-201ENST00000478302 853 ntBASIC11.85□□□□□ -0.51
SSSCA1O60232 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 KRT18P58-201ENST00000527480 1120 ntBASIC11.85□□□□□ -0.51
SSSCA1O60232 RAB35-202ENST00000534951 939 ntTSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 AC092865.5-201ENST00000545435 363 ntBASIC11.85□□□□□ -0.51
SSSCA1O60232 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC11.85□□□□□ -0.51
SSSCA1O60232 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC11.85□□□□□ -0.51
SSSCA1O60232 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 OR2I1P-208ENST00000641137 4948 ntBASIC11.85□□□□□ -0.51
SSSCA1O60232 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 AC139712.1-201ENST00000378256 1875 ntBASIC11.85□□□□□ -0.51
SSSCA1O60232 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC11.85□□□□□ -0.51
SSSCA1O60232 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SSSCA1O60232 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 RNU1-114P-201ENST00000365297 166 ntBASIC11.84□□□□□ -0.51
SSSCA1O60232 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
SSSCA1O60232 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.84□□□□□ -0.51
SSSCA1O60232 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 YBX1P5-201ENST00000509441 847 ntBASIC11.84□□□□□ -0.51
SSSCA1O60232 AC069262.1-201ENST00000539058 672 ntBASIC11.84□□□□□ -0.51
SSSCA1O60232 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC11.84□□□□□ -0.51
SSSCA1O60232 AL512356.2-201ENST00000546955 174 ntBASIC11.84□□□□□ -0.51
SSSCA1O60232 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC11.84□□□□□ -0.51
SSSCA1O60232 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.84□□□□□ -0.51
SSSCA1O60232 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 AC138761.1-201ENST00000584393 385 ntBASIC11.84□□□□□ -0.51
SSSCA1O60232 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 AC093813.1-201ENST00000605066 256 ntBASIC11.84□□□□□ -0.51
SSSCA1O60232 TEX48-202ENST00000612244 662 ntTSL 3 BASIC11.84□□□□□ -0.51
SSSCA1O60232 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 NME1-209ENST00000511355 1645 ntTSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
SSSCA1O60232 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SSSCA1O60232 CARS-214ENST00000529772 2637 ntTSL 2 BASIC11.84□□□□□ -0.51
SSSCA1O60232 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms