Protein–RNA interactions for Protein: A6NER0

TBC1D3F, TBC1 domain family member 3F, humanhuman

Predicted RBP Predictions only

Length 549 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TBC1D3FA6NER0 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 IGF1-203ENST00000392904 761 ntTSL 5 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AL627422.1-201ENST00000434104 580 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AC079112.1-201ENST00000454972 939 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 LDHBP1-201ENST00000455730 1119 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AP002803.1-201ENST00000528836 498 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 FOS-204ENST00000554617 796 ntTSL 2 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 KRT8P1-201ENST00000557533 1207 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 RN7SL555P-201ENST00000584742 339 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AC005632.3-201ENST00000605544 308 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AC011491.1-203ENST00000637688 543 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 LAP3P2-201ENST00000454686 1454 ntBASIC14.38□□□□□ -0.11
TBC1D3FA6NER0 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AC015656.1-201ENST00000624209 3578 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AC253536.4-201ENST00000440539 267 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 RPL7P35-201ENST00000446943 740 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 CHCHD2P9-201ENST00000461726 456 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AC135983.4-201ENST00000564116 1262 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 MIR4522-201ENST00000584932 87 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AC138894.2-201ENST00000602838 371 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AC087392.5-201ENST00000612517 489 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 AC242376.2-201ENST00000619355 883 ntBASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.37□□□□□ -0.11
TBC1D3FA6NER0 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
TBC1D3FA6NER0 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms