Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC133552.6-201ENST00000613406 534 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AL137784.3-201ENST00000623858 2288 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AC073548.1-201ENST00000624088 1882 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 GK-202ENST00000378941 458 ntTSL 3 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 RN7SKP175-201ENST00000408472 289 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 MIR1202-201ENST00000408529 83 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 MIR1909-201ENST00000411312 80 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ATP5G2P4-201ENST00000442175 420 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AL391280.1-201ENST00000506969 1062 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 KRT8P28-201ENST00000433288 1390 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AC009093.10-201ENST00000641956 1442 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
FOXA2Q9Y261 AC111170.3-201ENST00000624282 2464 ntBASIC11.74□□□□□ -0.53
FOXA2Q9Y261 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
FOXA2Q9Y261 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms