Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC103810.3-201ENST00000583567 96 ntBASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 AC008825.2-201ENST00000603374 718 ntBASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AC006504.5-208ENST00000588784 2401 ntBASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 POM121L10P-201ENST00000436994 1285 ntBASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AL035414.1-201ENST00000451327 857 ntBASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 AC020910.6-201ENST00000623084 1459 ntBASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP4CQ96CF2 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 KHSRPP1-201ENST00000427983 1768 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AC244394.1-201ENST00000435000 1665 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 EIF4HP1-201ENST00000453115 687 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 IGHJ2P-201ENST00000454480 60 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AC126915.1-201ENST00000522847 1038 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AL139099.5-201ENST00000635274 300 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 AC004899.1-201ENST00000424687 1714 ntBASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP4CQ96CF2 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms