Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.8■□□□□ 0.44
RC3H1Q5TC82 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 AC011498.7-201ENST00000624986 2027 ntBASIC17.79■□□□□ 0.44
RC3H1Q5TC82 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 AL359219.1-201ENST00000556311 934 ntBASIC17.79■□□□□ 0.44
RC3H1Q5TC82 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.79■□□□□ 0.44
RC3H1Q5TC82 AC113385.2-201ENST00000614465 762 ntBASIC17.79■□□□□ 0.44
RC3H1Q5TC82 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.79■□□□□ 0.44
RC3H1Q5TC82 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 SALL4P6-201ENST00000429385 1691 ntBASIC17.79■□□□□ 0.44
RC3H1Q5TC82 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RC3H1Q5TC82 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 RPL10-203ENST00000406022 748 ntTSL 3 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.78■□□□□ 0.44
RC3H1Q5TC82 FTLP5-201ENST00000586853 534 ntBASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AC015909.5-201ENST00000624336 2266 ntBASIC17.78■□□□□ 0.44
RC3H1Q5TC82 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AC013268.4-201ENST00000637413 2228 ntBASIC17.78■□□□□ 0.44
RC3H1Q5TC82 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RC3H1Q5TC82 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.77■□□□□ 0.44
RC3H1Q5TC82 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
RC3H1Q5TC82 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms