Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 KRT8P4-201ENST00000509735 1454 ntBASIC11.75□□□□□ -0.53
CX3CL1P78423 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
CX3CL1P78423 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.75□□□□□ -0.53
CX3CL1P78423 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.75□□□□□ -0.53
CX3CL1P78423 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CX3CL1P78423 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 AC105206.1-202ENST00000314927 2368 ntBASIC11.74□□□□□ -0.53
CX3CL1P78423 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 MPV17-206ENST00000402722 827 ntTSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 AL136309.1-201ENST00000403917 691 ntBASIC11.74□□□□□ -0.53
CX3CL1P78423 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 RGS5-214ENST00000429865 754 ntTSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.74□□□□□ -0.53
CX3CL1P78423 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 HILS1-202ENST00000545329 423 ntBASIC11.74□□□□□ -0.53
CX3CL1P78423 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
CX3CL1P78423 MIR6775-201ENST00000617557 69 ntBASIC11.74□□□□□ -0.53
CX3CL1P78423 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 AC008687.7-202ENST00000637404 953 ntBASIC11.74□□□□□ -0.53
CX3CL1P78423 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.74□□□□□ -0.53
CX3CL1P78423 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC11.74□□□□□ -0.53
CX3CL1P78423 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CX3CL1P78423 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.74□□□□□ -0.53
CX3CL1P78423 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms