Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 AC069120.2-201ENST00000524091 540 ntBASIC12.12□□□□□ -0.47
HOXA1P49639 AC027369.6-201ENST00000525520 931 ntBASIC12.12□□□□□ -0.47
HOXA1P49639 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 AC044860.1-202ENST00000559481 777 ntBASIC12.12□□□□□ -0.47
HOXA1P49639 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 AL671883.3-201ENST00000603274 991 ntBASIC12.12□□□□□ -0.47
HOXA1P49639 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC12.12□□□□□ -0.47
HOXA1P49639 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 ELN-216ENST00000429192 3298 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 CA14-201ENST00000369111 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 GAS8-220ENST00000620723 3308 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HOXA1P49639 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC12.12□□□□□ -0.47
HOXA1P49639 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC12.12□□□□□ -0.47
HOXA1P49639 TUBB3P1-201ENST00000405796 1332 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.11□□□□□ -0.47
HOXA1P49639 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 MDGA1-207ENST00000505425 3021 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 SLC25A25-203ENST00000373068 3431 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 LITAF-221ENST00000622633 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 AP000437.1-201ENST00000624057 2085 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
HOXA1P49639 AL137783.1-201ENST00000623494 1896 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 AL138709.1-201ENST00000614840 1693 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
HOXA1P49639 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.11□□□□□ -0.47
HOXA1P49639 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms