Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A5P29400 LILRP2-202ENST00000413572 1383 ntBASIC16.76■□□□□ 0.27
COL4A5P29400 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL4A5P29400 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A5P29400 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 RPSAP70-201ENST00000504462 864 ntBASIC16.75■□□□□ 0.27
COL4A5P29400 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL4A5P29400 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 MIR1307-201ENST00000408840 149 ntBASIC16.75■□□□□ 0.27
COL4A5P29400 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC16.75■□□□□ 0.27
COL4A5P29400 KRT18P44-201ENST00000416086 1285 ntBASIC16.75■□□□□ 0.27
COL4A5P29400 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC16.75■□□□□ 0.27
COL4A5P29400 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL4A5P29400 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.75■□□□□ 0.27
COL4A5P29400 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL4A5P29400 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.75■□□□□ 0.27
COL4A5P29400 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL4A5P29400 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A5P29400 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 AC008620.2-201ENST00000510294 1569 ntBASIC16.74■□□□□ 0.27
COL4A5P29400 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 HDGF-202ENST00000368206 960 ntTSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 MIR611-201ENST00000384869 67 ntBASIC16.74■□□□□ 0.27
COL4A5P29400 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
COL4A5P29400 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 B9D1-206ENST00000461069 923 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A5P29400 AC233724.9-201ENST00000511694 407 ntBASIC16.74■□□□□ 0.27
COL4A5P29400 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC16.74■□□□□ 0.27
COL4A5P29400 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC16.74■□□□□ 0.27
COL4A5P29400 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC16.74■□□□□ 0.27
COL4A5P29400 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL4A5P29400 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
COL4A5P29400 HTR7P1-202ENST00000624664 4411 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 AC089987.1-201ENST00000551654 2209 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 USP17L6P-201ENST00000382470 1197 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC16.73■□□□□ 0.27
COL4A5P29400 TPT1P11-201ENST00000458482 498 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 AC093700.1-201ENST00000503348 717 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.73■□□□□ 0.27
COL4A5P29400 MIR5091-201ENST00000578707 93 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC16.73■□□□□ 0.27
COL4A5P29400 IFNL3P1-201ENST00000595082 501 ntBASIC16.73■□□□□ 0.27
COL4A5P29400 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL4A5P29400 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.73■□□□□ 0.27
COL4A5P29400 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms